PhenoMeNal (Phenome and Metabolome aNalysis) is a comprehensive and standardised e-infrastructure that supports the data processing and analysis pipelines for molecular phenotype data generated by metabolomics applications.
See About us.

App Library
Application Library (service catalogue) listing open source tools currently available through the PhenoMeNal Cloud Research Environment (CRE).

Cloud Research Environment
Deploy your own Cloud Research Environment (CRE) for Metabolomics data analysis on private and public cloud providers.
PhenoMeNal Galaxy Installation
Access all our available tools through an open Galaxy workflow installation which runs on an scalable infrastructure provided by PhenoMeNal partners.
User Support
Our online training page offers tutorials on PhenoMeNal Cloud Research Environment deployment, workflow creation and tools usage.

14 participants across the UK and Europe.
User documentation and developer resources.
PhenoMeNal GitHub Repos.

Contact Us
For feedback and questions, email us or use our Online Feedback Form.

Latest News


We had a great time hacking infrastructure for long term running #Kubernetes clusters for @galaxyproject on #OpenStack with @PhnmlH2020 partners at @emblebi.

Have questions on security and risks with Virtual Research Environments? Join @PhnmlH2020 @NordicTryggve to discuss on Risk Assessment for Using Sensitive Data in the Cloud on 13 March, 10:00-12:00 CET.

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Latest News

ELSI workshop

Venue: EMBL-EBI, UK; Organiser: ICL & EMBL-EBI; Date: February 21st, 2018. PhenoMeNal is hosting a half-day workshop on Ethical, Legal and Social Implications (ELSI). The objectives of the workshop are: To understand ELSI issues governing patient data. Security of the PhenoMeNal Infrastructure including GDPR implications. The workshop will showcase lighting talks by Gauthier Chassang (INSERM), Ben Glampson (Imperial College)…

PhenoMeNal Hackathon: Public Instance Administration and Galaxy

PhenoMeNal Hackathon: Public Instance Administration and Galaxy Venue: EMBL-EBI, UK; Organiser: EMBL-EBI; Date: February 19th-21st, 2018. Workshop Synopsis Bring all participants up to speed on the details of the PhenoMeNal Kubernetes-based deployment architecture and on issues arising while administering long-running PhenoMeNal deployments. Hands-on hacking sessions will focus on designing and prototype solutions to better secure, monitor and…

Risk Assessment for Using Sensitive Data in the Cloud

Tryggve 2, is  a project within The Nordic e-Infrastructure Collaboration (NeIC), consisting of the Nordic countries such as Sweden, Finland, Norway and Denmark and is hosted by the Nordic ELIXIR nodes. Tryggve develops and facilitates access to secure e-infrastructure for sensitive data, suitable for hosting large-scale cross-border biomedical research studies. With GDPR (General Data Protection Regulation)…