Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies, IPK Metabolomics Task Force, Gatersleben, April 2018.
Computational Metabolomics,German Metabolomics Society kick-off, Munich, May 2018.
From profiling to biochemical insights — Bioinformatics & Mass Spectrometry, Seminar Colorado State University, Fort Collins, June 2018.
Metabolite profiling and annotation with interoperable and scalable microservices, Metabolomics Conference, Seattle, June 2018.
Deploy PhenoMeNal with KubeNow, EOSC Hub All Hands Meeting, Spain, April 2018.
Metabolomics data analysis in the context of metabolomics data, Training on data analysis of metabolomics data, South Africa, March 2018.
The Elixir metabolomics community and implementation study on metabolite identification, 12th CeBiTec symposium 2018, Big data in Medicine and Biotechnology, Bielefeld, March 2018.
Deploy PhenoMeNal with KubeNow, EOSC Hub All Hands Meeting, Spain, March 2018
Hitchhikers Guide to CompMS, LRC Summer School “High Throughput Screening of Enzymes”, Halle, March 2018.
Cloud 101 and PhenoMeNal Overview, denbi Winter School, Germany, March 2018
Metabolomics, Cloud 101 and PhenoMeNal Overview Workshop, U. Minho Bioinformatics Master’s Bioinformatics Week, Portugal, March 2018.
nmrML, an open access NMR raw data standard supported by Workflows, German NMR Conference, Mainz, March 2018.
Galaxy tools and workflows for metabolomics: A community effort to make data processing and analysis accessible, reproducible, and transparent, Galaxy community kickoff meeting and Galaxy User Conference, Freiburg, March 2018.
Using Galaxy workflows for metabolomics, EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists, February 2018, EMBL-EBI, Cambridge, UK.
Statistical workflows with Galaxy, PhenoMeNal Gateway workshop, December 2017, Birmingham, UK
nmrML: An open vendor-neutral data exchange format for NMR metabolomics, MetaboMeeting 2017, December 2017, Birmingha, UK.
Overcoming acquired drug resistance driven by metabolic reprogramming in colorectal cancer: CDK4/6 as a model target, MetaboMeeting 2017, December 2017, Birmingham, UK.
Metabolomics in the Cloud: Scaling Computational Tools to Big Data, MetaboMeeting 2017, December 2017, Birmingham, UK.
Advancing metabolomics towards regulatory applications in human and environmental toxicology, MetaboMeeting 2017, December 2017, Birmingham, UK.
Overcoming acquired drug resistance driven by metabolic reprogramming in colorectal cancer: CDK4/6 as a model target, MetaboMeeting 2017, December 2017, Birmingham, UK
PhenoMeNal: Virtual Research Environments for Metabolomics as a use case in Tryggve2, NeIC Tryggve2 Kickoff, November 2017, Stockholm, Sweden.
Data-intensive applications on cloud computing resources: Applications in life sciences, de.NBI Symposium 2017 “The Future Development of Bioinformatics in Germany and Europe”, October 2017, Bielefeld, Germany.
Scalable and reproducible workflows with Pachyderm,COST-CHARME ‘Big Data Training School for Life Sciences, 18-22 September 2017 in Uppsala, Sweden.
Large-scale clinical metabolomics using mass spectrometry, COST-CHARME ‘Big Data Training School for Life Sciences, 18-22 September 2017 in Uppsala, Sweden
biodb R package: a unified framework to access biological and chemical databases, International conference on bioinformatics and computational biology (BBCC2017), 18-20 Dec. 2017, Naples.
Scalable and reproducible workflows with Pachyderm, DevFest Siberia 2017, 23-24 Sept 2017, Novosibirsk, Russia.
KubeNow: A cloud agnostic platform for microservice-oriented applications, Imperial College Computing Student Workshop (ICCWS2017), October 2017, London UK.
KubeNow: A cloud agnostic platform for microservice-oriented applications, OpenRiskNet workshop on microservice development, September 2017, Uppsala, Sweden
Who to follow? Recommendation systems used to improve metabolic profiling of Hepatic Encephalopathy, EUSTM 2017, European Society of Translational Medecine conference, October 2017, Berlin.
PhenoMeNal – Large scale computing for medical metabolomics, RCUK Cloud Working Group Workshop, November 2016. The workshop was intended to bring together researchers and technical specialists to share expertise in the application of cloud computing technology for the research community. Click here to view.
PhenoMeNal: Large Scale Computing for Medical Metabolomics, Genome Campus Software Craftsmanship Community, 2016, EMBL-EBI, UK. The presentation describes the work done in the context of containerising metabolomics software tools and running them on top of a container orchestrator environment (Google Kubernetes), a cluster for containers that can be deployed on scalable infrastructure. Click here to view.
PhenoMeNal: Large Scale Computing for Medical Metabolomics, Industry Programme Quarterly Meeting, September 2016, EMBL-EBI, UK.The presentation was part of the quarterly meeting for EMBL-EBI Industry Programme. Click here to view
Deciphering cancer metabolism using NMR,8th GERMN / 5th Iberian NMR Meeting, June 2016, Valencia, Spain.
PhenoMeNal H2020 project: A gateway to personalised medicine, Metabolic phenotyping in clinical practice, May 2016, Barcelona. The workshop was hosted by the PhenoMeNal consortium to define the state-of-the-art in Metabolic Phenotyping in the clinic. The event was attended by a mixed audience from medical/clinical, industry or commercial, government, working or collaborating using metabolomics data and tools and technologies related to clinic. Click here to view
PhenoMeNal: A comprehensive and standardised e-infrastructure for analysing medical phenotype data, PhenoMeNal Industry Workshop, June 2016, Dublin. The workshop was hosted during the Metabolomics Conference in Dublin with an aim to create a lasting interaction with the industy, in order to raise awareness of the PhenoMeNal initiative and to ensure optimal interoperability of PhenoMeNal infrastructure and instrument vendor’s data formats and tools. Click here to view
MetExplore and Genome-Scale metabolic networks, MetaboMeeting, December 2015, Cambridge, UK
The Workflow4Metabolomics computational infrastructure: meeting the workflow challengeMetaboMeeting, December 2015, Cambridge.