Author Archives : Namrata

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Registered for Metabolomics 2018?  Here's a guide to what we are up to in Seattle during the 14th International Conference of the Metabolomics Society: Metabolomics Data Analysis with XCMS and Galaxy, Workshop, Sunday, June 24, 12:00pm - 2:00pm Metabolite profiling and annotation with interoperable and scalable microservices, Steffen Neumann, Parallel Session: 3. Big Data: Databases and Cloud…
Date: Friday 6 July 2018, 10:00 -  11:00 (GMT) Abstract: Metabolomics datasets are the outcome of biochemical events ruled by enzymatic reactions. All these reactions, and related substrates and products, can be gathered in a single object called a metabolic network or in a list of metabolic pathways. In this webinar, Fabien Jourdan, INRA,  will first present how pathways can be…
Date: Wednesday 6 - Friday 8 June 2018. The PhenoMeNal consortium is pleased to announce a Live Online Training, via a series of live webinars, in which participants will become familiar with the open-source tools and workflows in the PhenoMeNal infrastructure. This event will include live webinars with time to do supported, self-directed exercises using the resources introduced during the webinars. Each…
Date: Thursday 31 May 2018, 15:00 -  16:00 (GMT) Abstract: In this webinar, Luca Pireddu from Centre for Advanced Studies, Research and Development in Sardinia will give a tour of PhenoMeNal portal including step-by-step guidance on how to deploy your own private PhenoMeNal instance on cloud computing resources. You'll learn how to manage your deployment and access the services it provides.  Finally,…
Date: Wednesday 18 April 2018, 16:00 -  17:00 GMT Abstract: Statistical analysis offers powerful approaches to mine complex and high-dimension datasets, find significant features, and build prediction models with high-prediction performance. Due to the high number of methods available, their complex mathematical background, and the potential pitfalls due to biases and overfitting, a good understanding of each step as well as…
The PhenoMeNal consortium is pleased to announce its next round of usability study of its Cloud Research Environment Portal. What is the purpose of the study? The PhenoMeNal Gateway/ Cloud Research Portal is the entry point to an array of useful metabolomics applications, all available through a user-friendly, standard scientific open-source web environments. We use open-source tools…
Date and Time:  Wednesday 4th  April 2018, 14:00 – 15:00 GMT Abstract Ola Spjuth, (Uppsala University), in his webinar on Challenges and Opportunities with Virtual Research Environments, will talk about Virtual Research Environments (VREs) and their application to data analysis. In his presentation, Ola,  will explain the motivation and approach taken by the PhenoMeNal consortium when developing a cloud-agnostic on-demand VRE for metabolomics implemented using…
We are pleased to announce the 2018.02 release “Cerebellin” of the PhenoMeNal infrastructure. The new release is the result of half a year of intense developments and represents a major upgrade to the 2017-08 production release Bucetin. The main features of this release are: Improved usability following extensive User experience tests The Infrastructure has improved stability…
Venue: EMBL-EBI, UK; Organiser: ICL & EMBL-EBI; Date: February 21st, 2018. PhenoMeNal is hosting a half-day workshop on Ethical, Legal and Social Implications (ELSI). The objectives of the workshop are: To understand ELSI issues governing patient data. Security of the PhenoMeNal Infrastructure including GDPR implications. The workshop will showcase lighting talks by Gauthier Chassang (INSERM), Ben Glampson (Imperial College)…
Tryggve 2, is  a project within The Nordic e-Infrastructure Collaboration (NeIC), consisting of the Nordic countries such as Sweden, Finland, Norway and Denmark and is hosted by the Nordic ELIXIR nodes. Tryggve develops and facilitates access to secure e-infrastructure for sensitive data, suitable for hosting large-scale cross-border biomedical research studies. With GDPR (General Data Protection Regulation)…