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Venue: EMBL-EBI, UK; Organiser: ICL & EMBL-EBI; Date: February 21st, 2018. PhenoMeNal is hosting a half-day workshop on Ethical, Legal and Social Implications (ELSI). The objectives of the workshop are: To understand ELSI issues governing patient data. Security of the PhenoMeNal Infrastructure including GDPR implications. The workshop will showcase lighting talks by Gauthier Chassang (INSERM), Ben Glampson (Imperial College)…
Tryggve 2, is  a project within The Nordic e-Infrastructure Collaboration (NeIC), consisting of the Nordic countries such as Sweden, Finland, Norway and Denmark and is hosted by the Nordic ELIXIR nodes. Tryggve develops and facilitates access to secure e-infrastructure for sensitive data, suitable for hosting large-scale cross-border biomedical research studies. With GDPR (General Data Protection Regulation)…
Date and Time:  Wednesday 7 February 2018, 16:00 -  17:00 GMT Abstract:  In this webinar, Dr. Timothy Ebbels, Faculty of Medicine, Department of Surgery & Cancer, Imperial College London, will talk on how a typical analysis may benefit from up-scaling to a cloud solution, using a conventional NMR tool, BATMAN and examine how it performs on differing levels of compute resources. The tests were carried…
PhenoMeNal team is looking forward to meeting you at MetaboMeeting 2017, 11-13th December, University of Birmingham, UK.  Visit us for a hands-on session on using Cloud Research Environment (CRE) for data analysis. See schedule below:  
BATMAN: Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra Bayesian automated metabolite analyzer for NMR (BATMAN) is an open source R-package for estimation of concentration of metabolites from Nuclear Magnetic Resonance spectral data. The software uses a Bayesian model of 1D NMR spectra to automatically deconvolve and quantify metabolites in complex mixtures.…
On November 23rd, 2017 the SURF - Special Interest Group: "Compute Resources for Life Science Research" in the Netherlands organised a seminar to explore the state of the art in using compute resources from within Virtual Research Environments (VRE). A small group of bioinformaticians, system administrators, and research IT/project managers shared both their interest and…
MetFrag: Annotation of high precision tandem mass spectra of metabolites MetFrag, one of the popular metabolomic analysis tools in the PhenoMeNal App library, is an insilico fragmenter used in the annotation of high precision tandem mass spectra of metabolites. Launched in 2010, the tool has grown in the past 7 years with new functions that…
Date and time: Thursday 23rd  November 2017, 4:00 PM – 5:00 PM GMT Abstract: In this webinar, Dr. Steffen Neumann (Leibniz Institute of Plant Biochemistry), will introduce the MetFrag system and then focus on using it in Galaxy as part of the PhenoMeNal infrastructure.  The MetFrag workflow goes a first step to annotate molecules from compound (metabolite) databases to MS/MS (tandem mass spectrometry)…
The PhenoMeNal consortium has been working hard towards establishing contacts and integrating with other European infrastructures. As part of this initiative, Ola Spjuth, presented PhenoMeNal and the use of Virtual Research Environments (VRE) in dealing with sensitive data at the Nordic Tryggve2 Kickoff on 7 November 2017 in Märsta, Sweden. The Tryggve 2, is  a project within The Nordic e-Infrastructure…
Following the success of our recent CloudMET and Metabolomic workflows courses, we are pleased to announce one more workshop (free admission!) on 14th December at Murray Learning Centre, University of Birmingham. This workshop will feature introductory lectures  followed by practical sessions where you will be using the PhenoMeNal Gateway to run data-processing and analysis workflows. What is it?…