Online Training

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The PhenoMeNal online training provides researchers a basic understanding about the services, software tools and workflows provided by the PhenoMeNal infrastructure.

PhenoMeNal: Accessing Metabolomics Workflows in Galaxy

This course will give you an overview of PhenoMeNal, how to create your cloud research environment, and how to access Galaxy workflows for metabolomics data.

How to find and use Galaxy application via the PhenoMeNal portal

This screencast is a tutorial on how to find and use the Galaxy Application via the PhenoMeNal Cloud research Environment Portal. This sub-workflow is part of the Sacurine-statistics workflow available on the W4M e-infrastructure (

The science behind Stable Isotope Resolved Metabolomics (SIRM) used within the Fluxomics Workflow

The objective of the workflow is estimation of metabolic reaction-fluxes by fitting flux-balanced model predictions and experimental mass-spectrometry measurements of 13C propagation from labelled substrates to metabolites.

Execution of Fluxomics Workflow

To try the workflow, please download and unzip first this data to your own machine.