PhenoMeNal (Phenome and Metabolome aNalysis) is a comprehensive and standardised e-infrastructure that supports the data processing and analysis pipelines for molecular phenotype data generated by metabolomics applications.
See About us.

App Library
Application Library (service catalogue) listing open source tools currently available through the PhenoMeNal Cloud Research Environment (CRE).

Cloud Research Environment
Deploy your own Cloud Research Environment (CRE) for Metabolomics data analysis on private and public cloud providers.
PhenoMeNal Galaxy Installation
Access all our available tools through an open Galaxy workflow installation which runs on an scalable infrastructure provided by PhenoMeNal partners.
User Support
Our online training page offers tutorials on PhenoMeNal Cloud Research Environment deployment, workflow creation and tools usage.

14 participants across the UK and Europe.
User documentation and developer resources.
PhenoMeNal GitHub Repos.

Contact Us
For feedback and questions, email us or use our Online Feedback Form.

Latest News


.@PhnmlH2020 @EU_H2020 #workflow #containers & job offloading to help researchers; also reusable 4 other #data types! #FAIRdata @eoscpilot


Our @PhnmlH2020 @EU_H2020 stakeholders & SAB meeting kicks off! #FAIRdata #metabolomics #phenome #data #metadata #standards @OxfordeResearch

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Latest News

Joint SAB-Stakeholder-Annual Consortium Meeting

PhenoMeNal will host its joint SAB-Stakeholder-Annual Consortium meeting at EMBL-EBI, UK on 15-16th June 2017. The two-day event will be attended by the scientific advisors, stakeholders and members of the the consortium and will include lighting talks on reuse of health data, data privacy and clinical metabolomics by the expert panel and demonstrations by the PhenoMeNal partners…

Future of Metabolomics in ELIXIR – 25th April 2017

The PhenoMeNal project, ELIXIR-NL and ELIXIR-DE organised a strategic workshop on the “Future of Metabolomics in ELIXIR” on 25th April in Frankfurt, Germany. The one-day workshop discussed the metabolomics resources and services available through some of the ELIXIR nodes and developed a number of ELIXIR use cases for metabolomics and their alignments with the ELIXIR platforms.…

CloudMET 2017

The PhenoMeNal project in collaboration with the Universities of Cagliari, Jena and Cambridge are organizing the “Scientific School on Cloud-based Metabolomics Data Analysis and Collaboration” , to be held in CRS4’s research campus in [Pula, Sardinia, Italy] on September 11th-15th, 2017.  The School will offer participants an opportunity to learn about current topics in metabolomics, with…