SuccessConsole Output

Started by upstream project "container-bioc_devel_protmetcore" build number 22
originally caused by:
 Started by GitHub push by sneumann
[EnvInject] - Loading node environment variables.
Building remotely on docker-packer-ansible2 (packer ansible docker) in workspace /home/ubuntu/workspace/container-bioc_devel_metabolomics
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/phnmnl/bioc_docker/ # timeout=10
Fetching upstream changes from https://github.com/phnmnl/bioc_docker/
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/phnmnl/bioc_docker/ +refs/heads/*:refs/remotes/origin/*
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision 62537be8c148cdcffa45f38ef813465956a24571 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 62537be8c148cdcffa45f38ef813465956a24571
 > git rev-list 62537be8c148cdcffa45f38ef813465956a24571 # timeout=10
[container-bioc_devel_metabolomics] $ /bin/bash -xe /tmp/hudson4571387908524498792.sh
+ sed -i -e s#bioconductor/devel_protmetcore2#container-registry.phenomenal-h2020.eu/bioconductor/devel_protmetcore2# out/devel_metabolomics/Dockerfile
[container-bioc_devel_metabolomics] $ docker build -t docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:devel --file=out/devel_metabolomics/Dockerfile out/devel_metabolomics
Sending build context to Docker daemon  5.12 kB

Step 1 : FROM container-registry.phenomenal-h2020.eu/bioconductor/devel_protmetcore2
 ---> 9b0217023faa
Step 2 : MAINTAINER sneumann@ipb-halle.de
 ---> Using cache
 ---> f3edef02312d
Step 3 : RUN apt-get update -qq &&     apt-get install -y  --no-install-recommends     libfreetype6     libcairo2-dev     libexpat1-dev     libgmp3-dev     liblapack-dev     libnetcdf-dev     libopenbabel-dev     libgl1-mesa-dev     libglu1-mesa-dev     libgsl0-dev     libmpfr-dev     pkg-config     fftw3-dev     libgtk2.0-dev     libtiff5-dev     libnetcdf-dev     libmpfr-dev     libnetcdf-dev     liblapack-dev     cmake     default-jdk     libnetcdf-dev libpng-dev libbz2-dev liblzma-dev libpcre3-dev libicu-dev
 ---> Using cache
 ---> 0827bc2977d3
Step 4 : RUN bash -i -c 'wget -O libSBML-5.10.2-core-src.tar.gz http://downloads.sourceforge.net/project/sbml/libsbml/5.10.2/stable/libSBML-5.10.2-core-src.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fsbml%2Ffiles%2Flibsbml%2F5.10.2%2Fstable%2F && tar xzvf libSBML-5.10.2-core-src.tar.gz ; cd libsbml-5.10.2 && CXXFLAGS=-fPIC CFLAGS=-fPIC ./configure --prefix=/usr && make && make install && ldconfig'
 ---> Using cache
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Step 5 : RUN R CMD javareconf
 ---> Using cache
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Step 6 : ENV NETCDF_INCLUDE /usr/include
 ---> Using cache
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Step 7 : ADD install.R /tmp/
 ---> Using cache
 ---> 5c7cb43008aa
Step 8 : ADD http://master.bioconductor.org/todays-date /tmp/

 ---> Using cache
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Step 9 : RUN R -f /tmp/install.R
 ---> Using cache
 ---> 7c0f29e01962
Successfully built 7c0f29e01962
[container-bioc_devel_metabolomics] $ docker tag 7c0f29e01962 docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:latest
[container-bioc_devel_metabolomics] $ docker inspect 7c0f29e01962
[container-bioc_devel_metabolomics] $ docker push docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:devel
The push refers to a repository [docker-registry-v2.local:30750/bioconductor/devel_metabolomics2]
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devel: digest: sha256:33084d99dc66bf8f24417d0aaaa80e1eb3469c8e987fe63c06c5e039ee85ceaf size: 8691
[container-bioc_devel_metabolomics] $ docker push docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:latest
The push refers to a repository [docker-registry-v2.local:30750/bioconductor/devel_metabolomics2]
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latest: digest: sha256:33084d99dc66bf8f24417d0aaaa80e1eb3469c8e987fe63c06c5e039ee85ceaf size: 8691
Finished: SUCCESS