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#104 docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:devel docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:latest (May 20, 2017 8:51:07 PM)

  1. Manually install gridExtra to avoid failure of ChemmineR in (commit: faba8f1) — Steffen Neumann / githubweb

#103 docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:devel docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:latest (May 20, 2017 8:21:53 PM)

  1. Updated badges for steffen's dockers (commit: 205fb5b) — Lori Shepherd / githubweb
  2. Add documentation for updating at release time (commit: f27b78d) — Lori Shepherd / githubweb
  3. add mscore and proteomics containers (commit: 13f8c13) — Laurent / githubweb
  4. ammend as indicated by @lshep in PR #21 (commit: 5a64a26) — Laurent / githubweb
  5. raked to add out directories for new mscore and proteomics dockers (commit: 69d3b5c) — Lori Shepherd / githubweb
  6. add hooks to proteomics container (commit: c378ee7) — Laurent / githubweb
  7. Added hooks to proteomics (commit: ba9b79d) — Lori Shepherd / githubweb
  8. Change protmetcore parent to mscore (commit: 40b657d) — GitHub / githubweb
  9. add badges to prot containers (commit: b51d66d) — Laurent / githubweb
  10. add badges to prot containers (commit: 7857b87) — Laurent / githubweb
  11. add badges to prot containers (commit: 695f8aa) — Laurent / githubweb
  12. Rake to get updated protmetcore files (commit: 0c56fb1) — Lori Shepherd / githubweb
  13. add libxt-dev dep for Cairo (commit: 1c1a555) — Laurent / githubweb
  14. add libxt-dev dep to mscore (commit: 4a804d6) — Laurent / githubweb
  15. remove R hist (commit: c14d677) — Laurent / githubweb
  16. Missing dependency updated for mscore/proteomics (commit: 3cf4d0a) — Lori Shepherd / githubweb
  17. add libx11-dev dep (commit: 75527cb) — Laurent / githubweb
  18. add addition dep to mscore for fix proteomics container (commit: cb16e6d) — Laurent / githubweb
  19. install Cairo before Bioc packages (commit: 4fba285) — Laurent / githubweb
  20. remove multiple libnetcdf-dev deps (commit: 7c9a9f1) — Laurent / githubweb
  21. try with protmetcore as parent container (commit: 750ac52) — Laurent / githubweb
  22. try with protmetcore as parent container (commit: eb31b19) — Laurent / githubweb
  23. revert back to using mscore as proteomics' parent (commit: af41296) — Laurent / githubweb
  24. use protmetcore as parent - see (commit: f31c377) — Laurent / githubweb

#97 docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:devel docker-registry-v2.local:30750/bioconductor/devel_metabolomics2:latest (May 4, 2017 2:12:57 PM)

  1. If directories for out files don't exist, create (commit: cb33983) — Lori Shepherd / githubweb
  2. Update README (commit: d278e99) — Lori Shepherd / githubweb
  3. Fix spacing and headers (commit: 7f39c7b) — Lori Shepherd / githubweb
  4. Try to add in commented out packages (commit: e4b1341) — Lori Shepherd / githubweb
  5. Update package install list for core docker (commit: 0f619c1) — Lori Shepherd / githubweb
  6. Update release dockers for R3.3.3 (commit: 0f17be7) — Lori Shepherd / githubweb
  7. Update release information for packages (commit: 38a3e68) — Lori Shepherd / githubweb
  8. Change config to have one last build with R3.3.3 and Bioc3.4 (commit: 54c511d) — Lori Shepherd / githubweb
  9. Updates for Release R 3.4 Bioc 3.5 and devel 3.6 (commit: b3488b1) — Lori Shepherd / githubweb
  10. Update for release R 3.4 bioc 3.5 and devel 3.6 (commit: 9f99c7d) — Lori Shepherd / githubweb
  11. Modified for devel using Release version of R (commit: 7e0bc5c) — Lori Shepherd / githubweb
  12. take use_r_devel as rake variable in protmetcore and metabolomics (commit: 62537be) — Steffen Neumann / githubweb

#60 docker-registry-v2.local:30750/bioconductor/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/bioconductor/bioc_devel_metabolomics:latest (Jan 29, 2017 1:25:55 PM)

  1. Re-generate output file with correct parent (commit: b9ab232) — Steffen Neumann / githubweb

#57 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Jan 29, 2017 10:35:27 AM)

  1. Update generated file (commit: aa4626c) — Steffen Neumann / githubweb

#56 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Jan 29, 2017 9:50:55 AM)

  1. add intermediate container with packages common to proteomics and (commit: 2dcae7c) — Steffen Neumann / githubweb

#55 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Jan 28, 2017 11:34:51 PM)

  1. use core2 as parent (commit: 13b961a) — Steffen Neumann / githubweb

#54 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Jan 28, 2017 10:39:36 PM)

  1. Update to use Bioconductor repos and debug devel_base (commit: 9acb543) — Lori Shepherd / githubweb
  2. Debug and Update devel_core (commit: 4a52fae) — Lori Shepherd / githubweb
  3. Debug and Update devel_metabolomics (commit: e8d4598) — Lori Shepherd / githubweb
  4. Changes to fix upstream ERRORS (commit: 47a4a20) — Lori Shepherd / githubweb
  5. Clean up white space and empty conditional (commit: 92abf24) — Lori Shepherd / githubweb
  6. Debug release_base (commit: a8511ef) — Lori Shepherd / githubweb
  7. Clean up (commit: 952a85d) — Lori Shepherd / githubweb
  8. Remove out/ directory of defunct dockers (commit: 34db185) — Lori Shepherd / githubweb
  9. Clean up core and base out directory (commit: 40ba14c) — Lori Shepherd / githubweb
  10. Add webhook for dockerhub tags (commit: fbfbbfc) — Lori Shepherd / githubweb
  11. Attempt debug (commit: 2d32c47) — Lori Shepherd / githubweb
  12. Fix dockerhub ERROR (commit: 63c17ec) — Lori Shepherd / githubweb
  13. Fix dockerhub ERROR (commit: deb4685) — Lori Shepherd / githubweb
  14. Fix dockerhub ERROR (commit: cf3bd70) — Lori Shepherd / githubweb
  15. Fix DockerHub ERROR (commit: cba3cd3) — Lori Shepherd / githubweb
  16. More Fix DockerHub (commit: e8eae26) — Lori Shepherd / githubweb
  17. Another DockerHub fix (commit: 51ad072) — Lori Shepherd / githubweb
  18. Fix ERROR related to new rocker/rstudio-daily update (commit: d830987) — Lori Shepherd / githubweb
  19. Fix gfortran error for installing Matrix package (commit: 1498a9e) — Lori Shepherd / githubweb
  20. Add execute to script for tagging (commit: fa344a2) — Lori Shepherd / githubweb
  21. Reverse tagging (commit: 5d2c2ad) — Lori Shepherd / githubweb
  22. Update tagging for core (commit: 9d41168) — Lori Shepherd / githubweb
  23. Add fix during rake for hooks directory (commit: ac35628) — Lori Shepherd / githubweb
  24. devel and release for metabolomics (commit: 29e52f1) — Steffen Neumann / githubweb

#47 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Nov 11, 2016 7:38:24 PM)

  1. switch back to official bioconductor prefix (commit: 509c2db) — Steffen Neumann / githubweb

#46 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Nov 11, 2016 7:09:56 PM)

  1. force unstable apt install for some packages (commit: 6530d15) — Steffen Neumann / githubweb

#44 docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:devel docker-registry-v2.local:30750/phnmnl/bioc_devel_metabolomics:latest (Nov 10, 2016 11:21:53 PM)

  1. make sure missing dependencies are installed (commit: 315ac5d) — Steffen Neumann / githubweb
  2. pull gdb from unstable (commit: 39635b7) — Steffen Neumann / githubweb

#36 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.4 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Nov 6, 2016 10:12:13 PM)

  1. Dont mess with sources.list amymore, dont explicitly call for apt -t (commit: 2d2234f) — Steffen Neumann / githubweb

#34 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.4 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Oct 31, 2016 10:23:44 PM)

  1. revert to original bioconductor dockerhub repo for pull request (commit: 6926c82) — Steffen Neumann / githubweb

#33 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.4 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Oct 25, 2016 10:04:00 PM)

  1. Fix formatting (commit: 44ae800) — GitHub / githubweb
  2. bump versions to release=3.4 (commit: d9b743d) — Steffen Neumann / githubweb
  3. disable ReportingTools, epivizr and ggbio, which depend on OrganismDbi (commit: 7082832) — Steffen Neumann / githubweb
  4. disable ReportingTools and epivizr, which depend on OrganismDbi which (commit: 9fd861d) — Steffen Neumann / githubweb
  5. Install libgsl-dev instead of libgsl0-dev as system dependency in Debian (commit: 9e88311) — Steffen Neumann / githubweb
  6. change repo prefix, regenerate Dockerfiles (commit: 0e39052) — Steffen Neumann / githubweb

#31 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.4 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Aug 10, 2016 9:25:09 PM)

  1. Remove explicit Jessie from sources.list (commit: a5eb57a) — Steffen Neumann / githubweb

#25 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.4 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Aug 8, 2016 10:40:56 AM)

  1. Remove libgsl0ldbl from several Dockerfiles. Fix build documentation, (commit: 9f1b346) — Steffen Neumann / githubweb

#23 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Jul 29, 2016 1:49:25 PM)

  1. update bioc versions (commit: bf18dcb) — GitHub / githubweb
  2. Bump BioC versions (commit: 4a654df) — Steffen Neumann / githubweb
  3. don't install Rolexa (commit: af68b2e) — GitHub / githubweb
  4. Also update BiocInstaller in the base image (commit: cabdf46) — Steffen Neumann / githubweb
  5. Exclude ChemmineR and dependencies until ChemmineR builds successfully (commit: 3ccc2e2) — Steffen Neumann / githubweb
  6. choose correct parent (commit: 3ac029f) — Dan Tenenbaum / githubweb
  7. re-run rake on installFromBiocViews.R.in changed upstream (commit: fd37061) — Steffen Neumann / githubweb

#22 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Jul 27, 2016 1:45:00 PM)

  1. explicitly call ldconfig to pick up libsbml.so (commit: 04725b7) — Steffen Neumann / githubweb

#21 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Jul 26, 2016 9:28:50 PM)

  1. back down to single thread build for libsbml (commit: 33482d2) — Steffen Neumann / githubweb

#20 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Jul 26, 2016 4:05:17 PM)

  1. Build libsbml and rsbml from source (commit: 9e8ed84) — Steffen Neumann / githubweb

#18 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Jul 26, 2016 8:53:11 AM)

  1. Fix package name of libpng-dev dependency (commit: c36c37d) — Steffen Neumann / githubweb

#13 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Jul 25, 2016 7:39:20 PM)

  1. run rake (commit: ee29987) — Dan Tenenbaum / githubweb
  2. don't need special installation of ncdfFlow anymore (commit: d3484ce) — Dan Tenenbaum / githubweb
  3. update to JAGS-4.x; install ncurses-dev for SICtools (commit: 1ba1de8) — Dan Tenenbaum / githubweb
  4. delete old JAGS, add new (commit: 8aa014b) — Dan Tenenbaum / githubweb
  5. force removal of BiocInstaller if present before installing it (commit: 5e8d3eb) — Dan Tenenbaum / githubweb
  6. use if instead of tryCatch (commit: 3ee427f) — Dan Tenenbaum / githubweb
  7. tweaks to get release/microarray to build (commit: 0adc3b4) — Dan Tenenbaum / githubweb
  8. add Brian's docker cheat sheet (commit: 4973f9c) — vobencha / githubweb
  9. fix typos / reword README (commit: 87f611b) — vobencha / githubweb
  10. tame the README formatting (commit: 35d8882) — vobencha / githubweb
  11. work around matrixStats and ReportingTools issues so devel_core can (commit: 86e4c2d) — Dan Tenenbaum / githubweb
  12. remove leftover library tree from R-release (commit: 41ca45a) — Dan Tenenbaum / githubweb
  13. package name is xvfb not Xvfb (commit: 57600ee) — Dan Tenenbaum / githubweb
  14. Xvfb -> xvfb (commit: a6cfbd7) — Dan Tenenbaum / githubweb
  15. install libcairo2-dev (commit: 396d588) — Dan Tenenbaum / githubweb
  16. add liblapack-dev (commit: 30edb57) — Dan Tenenbaum / githubweb
  17. remove more traces of release R (commit: fff7696) — Dan Tenenbaum / githubweb
  18. remove r-base-core in devel (commit: 2c3291f) — Dan Tenenbaum / githubweb
  19. more removing R-release (commit: 3398f13) — Dan Tenenbaum / githubweb
  20. bioc-devel now pulls from R's 3.3 branch (commit: 4acc682) — Dan Tenenbaum / githubweb
  21. more aggressively remove 'wrong' R (commit: 770bd43) — Dan Tenenbaum / githubweb
  22. delete old R after installing new one (commit: cf8d6bb) — Dan Tenenbaum / githubweb
  23. change MAINTAINER to maintainer@bioconductor.org (commit: 88240ae) — vobencha / githubweb
  24. Added metabolomics biocView image (commit: 52a591e) — Steffen Neumann / githubweb

#11 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Mar 17, 2016 9:52:43 PM)

  1. prepare output directories for metabolomics (commit: 1772434) — Steffen Neumann / githubweb
  2. Found it (commit: dcabc10) — Steffen Neumann / githubweb
  3. devel_metabolomics builds locally (commit: fa78756) — Steffen Neumann / githubweb

#9 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Feb 6, 2016 9:21:25 PM)

  1. Find where my Dockerfile lives (commit: eeafd09) — Steffen Neumann / githubweb

#8 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:3.3 docker-registry.local:50000/phnmnl/bioc_devel_metabolomics:latest (Feb 6, 2016 9:17:49 PM)

  1. find my startx.sh (commit: 822bdfc) — Steffen Neumann / githubweb