FailedConsole Output

Skipping 4 KB.. Full Log
1604
DEBUG: Sourcing written file "PhenoMeNal_Versions.txt"...
DEBUG: TOOL_VERSION=201604
DEBUG: CONTAINER_VERSION=201604
DEBUG: Looking for git branch...
DEBUG: Found git as "/usr/bin/git".
DEBUG: Current git branch is "develop".
DEBUG: Adding prefix "dev_" to tag.
DEBUG: CONTAINER_TAG_PREFIX=dev_v201604_cv201604
[EnvInject] - Injecting environment variables from a build step.
[EnvInject] - Injecting as environment variables the properties file path 'PhenoMeNal_Versions.txt'
[EnvInject] - Variables injected successfully.
[container-passatutto] $ docker build -t docker-registry-v2.local:30750/phnmnl/passatutto:dev_v201604_cv201604.1 --no-cache=true --pull=true /home/ubuntu/workspace/container-passatutto
Sending build context to Docker daemon 557.1 kB
Sending build context to Docker daemon 1.114 MB
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Sending build context to Docker daemon 316.4 MB
Sending build context to Docker daemon   317 MB
Sending build context to Docker daemon 317.5 MB
Sending build context to Docker daemon 318.1 MB
Sending build context to Docker daemon 318.6 MB
Sending build context to Docker daemon 319.2 MB
Sending build context to Docker daemon 319.8 MB
Sending build context to Docker daemon 320.3 MB
Sending build context to Docker daemon 320.9 MB
Sending build context to Docker daemon 321.4 MB
Sending build context to Docker daemon   322 MB
Sending build context to Docker daemon 322.5 MB
Sending build context to Docker daemon 323.1 MB
Sending build context to Docker daemon 323.6 MB
Sending build context to Docker daemon 324.2 MB
Sending build context to Docker daemon 324.8 MB
Sending build context to Docker daemon 325.3 MB
Sending build context to Docker daemon 325.9 MB
Sending build context to Docker daemon 326.4 MB
Sending build context to Docker daemon   327 MB
Sending build context to Docker daemon 327.5 MB
Sending build context to Docker daemon 328.1 MB
Sending build context to Docker daemon 328.7 MB
Sending build context to Docker daemon 329.2 MB
Sending build context to Docker daemon 329.8 MB
Sending build context to Docker daemon 330.3 MB
Sending build context to Docker daemon 330.9 MB
Sending build context to Docker daemon 331.4 MB
Sending build context to Docker daemon   332 MB
Sending build context to Docker daemon 332.6 MB
Sending build context to Docker daemon 333.1 MB
Sending build context to Docker daemon 333.7 MB
Sending build context to Docker daemon 334.2 MB
Sending build context to Docker daemon 334.8 MB
Sending build context to Docker daemon 335.3 MB
Sending build context to Docker daemon 335.9 MB
Sending build context to Docker daemon 336.5 MB
Sending build context to Docker daemon   337 MB
Sending build context to Docker daemon 337.6 MB
Sending build context to Docker daemon 338.1 MB
Sending build context to Docker daemon 338.7 MB
Sending build context to Docker daemon 339.2 MB
Sending build context to Docker daemon 339.8 MB
Sending build context to Docker daemon 340.4 MB
Sending build context to Docker daemon 340.9 MB
Sending build context to Docker daemon 341.5 MB
Sending build context to Docker daemon   342 MB
Sending build context to Docker daemon 342.6 MB
Sending build context to Docker daemon 343.1 MB
Sending build context to Docker daemon 343.7 MB
Sending build context to Docker daemon 344.3 MB
Sending build context to Docker daemon 344.8 MB
Sending build context to Docker daemon 345.4 MB
Sending build context to Docker daemon 345.9 MB
Sending build context to Docker daemon 346.5 MB
Sending build context to Docker daemon   347 MB
Sending build context to Docker daemon 347.6 MB
Sending build context to Docker daemon 348.2 MB
Sending build context to Docker daemon 348.7 MB
Sending build context to Docker daemon 349.3 MB
Sending build context to Docker daemon 349.8 MB
Sending build context to Docker daemon 350.4 MB
Sending build context to Docker daemon 350.9 MB
Sending build context to Docker daemon 351.5 MB
Sending build context to Docker daemon 352.1 MB
Sending build context to Docker daemon 352.6 MB
Sending build context to Docker daemon 353.2 MB
Sending build context to Docker daemon 353.7 MB
Sending build context to Docker daemon 354.3 MB
Sending build context to Docker daemon 354.8 MB
Sending build context to Docker daemon 355.4 MB
Sending build context to Docker daemon   356 MB
Sending build context to Docker daemon 356.5 MB
Sending build context to Docker daemon 357.1 MB
Sending build context to Docker daemon 357.6 MB
Sending build context to Docker daemon 358.2 MB
Sending build context to Docker daemon 358.7 MB
Sending build context to Docker daemon 359.3 MB
Sending build context to Docker daemon 359.9 MB
Sending build context to Docker daemon 360.4 MB
Sending build context to Docker daemon   361 MB
Sending build context to Docker daemon 361.5 MB
Sending build context to Docker daemon 362.1 MB
Sending build context to Docker daemon 362.6 MB
Sending build context to Docker daemon 363.2 MB
Sending build context to Docker daemon 363.8 MB
Sending build context to Docker daemon 364.3 MB
Sending build context to Docker daemon 364.9 MB
Sending build context to Docker daemon 365.4 MB
Sending build context to Docker daemon   366 MB
Sending build context to Docker daemon 366.5 MB
Sending build context to Docker daemon 367.1 MB
Sending build context to Docker daemon 367.7 MB
Sending build context to Docker daemon 368.2 MB
Sending build context to Docker daemon 368.8 MB
Sending build context to Docker daemon 369.3 MB
Sending build context to Docker daemon 369.9 MB
Sending build context to Docker daemon 370.4 MB
Sending build context to Docker daemon   371 MB
Sending build context to Docker daemon 371.6 MB
Sending build context to Docker daemon 372.1 MB
Sending build context to Docker daemon 372.7 MB
Sending build context to Docker daemon 373.2 MB
Sending build context to Docker daemon 373.8 MB
Sending build context to Docker daemon 374.3 MB
Sending build context to Docker daemon 374.9 MB
Sending build context to Docker daemon 375.5 MB
Sending build context to Docker daemon   376 MB
Sending build context to Docker daemon 376.6 MB
Sending build context to Docker daemon 377.1 MB
Sending build context to Docker daemon 377.7 MB
Sending build context to Docker daemon 378.2 MB
Sending build context to Docker daemon 378.8 MB
Sending build context to Docker daemon 379.4 MB
Sending build context to Docker daemon 379.9 MB
Sending build context to Docker daemon 380.5 MB
Sending build context to Docker daemon   381 MB
Sending build context to Docker daemon 381.6 MB
Sending build context to Docker daemon 382.1 MB
Sending build context to Docker daemon 382.7 MB
Sending build context to Docker daemon 383.3 MB
Sending build context to Docker daemon 383.8 MB
Sending build context to Docker daemon 384.4 MB
Sending build context to Docker daemon 384.9 MB
Sending build context to Docker daemon 385.5 MB
Sending build context to Docker daemon   386 MB
Sending build context to Docker daemon 386.6 MB
Sending build context to Docker daemon 387.2 MB
Sending build context to Docker daemon 387.7 MB
Sending build context to Docker daemon 388.3 MB
Sending build context to Docker daemon 388.8 MB
Sending build context to Docker daemon 389.4 MB
Sending build context to Docker daemon 389.9 MB
Sending build context to Docker daemon 390.5 MB
Sending build context to Docker daemon 391.1 MB
Sending build context to Docker daemon 391.6 MB
Sending build context to Docker daemon 392.2 MB
Sending build context to Docker daemon 392.7 MB
Sending build context to Docker daemon 393.3 MB
Sending build context to Docker daemon 393.8 MB
Sending build context to Docker daemon 394.4 MB
Sending build context to Docker daemon   395 MB
Sending build context to Docker daemon 395.5 MB
Sending build context to Docker daemon 396.1 MB
Sending build context to Docker daemon 396.6 MB
Sending build context to Docker daemon 397.2 MB
Sending build context to Docker daemon 397.7 MB
Sending build context to Docker daemon 398.3 MB
Sending build context to Docker daemon 398.9 MB
Sending build context to Docker daemon 399.4 MB
Sending build context to Docker daemon   400 MB
Sending build context to Docker daemon 400.5 MB
Sending build context to Docker daemon 401.1 MB
Sending build context to Docker daemon 401.6 MB
Sending build context to Docker daemon 402.2 MB
Sending build context to Docker daemon 402.8 MB
Sending build context to Docker daemon 403.3 MB
Sending build context to Docker daemon 403.9 MB
Sending build context to Docker daemon 404.4 MB
Sending build context to Docker daemon   405 MB
Sending build context to Docker daemon 405.5 MB
Sending build context to Docker daemon 406.1 MB
Sending build context to Docker daemon 406.7 MB
Sending build context to Docker daemon 407.2 MB
Sending build context to Docker daemon 407.8 MB
Sending build context to Docker daemon 408.3 MB
Sending build context to Docker daemon 408.9 MB
Sending build context to Docker daemon 409.4 MB
Sending build context to Docker daemon   410 MB
Sending build context to Docker daemon 410.6 MB
Sending build context to Docker daemon 411.1 MB
Sending build context to Docker daemon 411.7 MB
Sending build context to Docker daemon 412.2 MB
Sending build context to Docker daemon 412.8 MB
Sending build context to Docker daemon 413.3 MB
Sending build context to Docker daemon 413.9 MB
Sending build context to Docker daemon 414.4 MB
Sending build context to Docker daemon   415 MB
Sending build context to Docker daemon 415.6 MB
Sending build context to Docker daemon 416.1 MB
Sending build context to Docker daemon 416.7 MB
Sending build context to Docker daemon 417.2 MB
Sending build context to Docker daemon 417.8 MB
Sending build context to Docker daemon 418.3 MB
Sending build context to Docker daemon 418.9 MB
Sending build context to Docker daemon 419.5 MB
Sending build context to Docker daemon   420 MB
Sending build context to Docker daemon 420.6 MB
Sending build context to Docker daemon 421.1 MB
Sending build context to Docker daemon 421.7 MB
Sending build context to Docker daemon 422.2 MB
Sending build context to Docker daemon 422.8 MB
Sending build context to Docker daemon 423.4 MB
Sending build context to Docker daemon 423.9 MB
Sending build context to Docker daemon 424.5 MB
Sending build context to Docker daemon   425 MB
Sending build context to Docker daemon 425.6 MB
Sending build context to Docker daemon 426.1 MB
Sending build context to Docker daemon 426.7 MB
Sending build context to Docker daemon 427.3 MB
Sending build context to Docker daemon 427.8 MB
Sending build context to Docker daemon 428.4 MB
Sending build context to Docker daemon 428.9 MB
Sending build context to Docker daemon 429.5 MB
Sending build context to Docker daemon   430 MB
Sending build context to Docker daemon 430.6 MB
Sending build context to Docker daemon 431.2 MB
Sending build context to Docker daemon 431.7 MB
Sending build context to Docker daemon 432.3 MB
Sending build context to Docker daemon 432.8 MB
Sending build context to Docker daemon 433.4 MB
Sending build context to Docker daemon 433.9 MB
Sending build context to Docker daemon 434.5 MB
Sending build context to Docker daemon 435.1 MB
Sending build context to Docker daemon 435.6 MB
Sending build context to Docker daemon 436.2 MB
Sending build context to Docker daemon 436.7 MB
Sending build context to Docker daemon 437.3 MB
Sending build context to Docker daemon 437.8 MB
Sending build context to Docker daemon 438.4 MB
Sending build context to Docker daemon   439 MB
Sending build context to Docker daemon 439.5 MB
Sending build context to Docker daemon 440.1 MB
Sending build context to Docker daemon 440.6 MB
Sending build context to Docker daemon 441.2 MB
Sending build context to Docker daemon 441.7 MB
Sending build context to Docker daemon 442.3 MB
Sending build context to Docker daemon 442.9 MB
Sending build context to Docker daemon 443.4 MB
Sending build context to Docker daemon   444 MB
Sending build context to Docker daemon 444.5 MB
Sending build context to Docker daemon 445.1 MB
Sending build context to Docker daemon 445.6 MB
Sending build context to Docker daemon 446.2 MB
Sending build context to Docker daemon 446.8 MB
Sending build context to Docker daemon 447.3 MB
Sending build context to Docker daemon 447.9 MB
Sending build context to Docker daemon 448.4 MB
Sending build context to Docker daemon   449 MB
Sending build context to Docker daemon 449.5 MB
Sending build context to Docker daemon 450.1 MB
Sending build context to Docker daemon 450.7 MB
Sending build context to Docker daemon 451.2 MB
Sending build context to Docker daemon 451.8 MB
Sending build context to Docker daemon 452.3 MB
Sending build context to Docker daemon 452.9 MB
Sending build context to Docker daemon 453.4 MB
Sending build context to Docker daemon   454 MB
Sending build context to Docker daemon 454.6 MB
Sending build context to Docker daemon 455.1 MB
Sending build context to Docker daemon 455.7 MB
Sending build context to Docker daemon 456.2 MB
Sending build context to Docker daemon 456.8 MB
Sending build context to Docker daemon 457.3 MB
Sending build context to Docker daemon 457.9 MB
Sending build context to Docker daemon 458.5 MB
Sending build context to Docker daemon   459 MB
Sending build context to Docker daemon 459.6 MB
Sending build context to Docker daemon 460.1 MB
Sending build context to Docker daemon 460.7 MB
Sending build context to Docker daemon 461.2 MB
Sending build context to Docker daemon 461.8 MB
Sending build context to Docker daemon 462.4 MB
Sending build context to Docker daemon 462.9 MB
Sending build context to Docker daemon 463.5 MB
Sending build context to Docker daemon   464 MB
Sending build context to Docker daemon 464.6 MB
Sending build context to Docker daemon 465.1 MB
Sending build context to Docker daemon 465.7 MB
Sending build context to Docker daemon 466.3 MB
Sending build context to Docker daemon 466.8 MB
Sending build context to Docker daemon 467.4 MB
Sending build context to Docker daemon 467.9 MB
Sending build context to Docker daemon 468.5 MB
Sending build context to Docker daemon   469 MB
Sending build context to Docker daemon 469.6 MB
Sending build context to Docker daemon 470.2 MB
Sending build context to Docker daemon 470.7 MB
Sending build context to Docker daemon 471.3 MB
Sending build context to Docker daemon 471.8 MB
Sending build context to Docker daemon 472.4 MB
Sending build context to Docker daemon 472.9 MB
Sending build context to Docker daemon 473.5 MB
Sending build context to Docker daemon 474.1 MB
Sending build context to Docker daemon 474.6 MB
Sending build context to Docker daemon 475.2 MB
Sending build context to Docker daemon 475.7 MB
Sending build context to Docker daemon 476.3 MB
Sending build context to Docker daemon 476.8 MB
Sending build context to Docker daemon 477.4 MB
Sending build context to Docker daemon   478 MB
Sending build context to Docker daemon 478.5 MB
Sending build context to Docker daemon 479.1 MB
Sending build context to Docker daemon 479.6 MB
Sending build context to Docker daemon 480.2 MB
Sending build context to Docker daemon 480.7 MB
Sending build context to Docker daemon 481.3 MB
Sending build context to Docker daemon 481.9 MB
Sending build context to Docker daemon 482.4 MB
Sending build context to Docker daemon   483 MB
Sending build context to Docker daemon 483.5 MB
Sending build context to Docker daemon 484.1 MB
Sending build context to Docker daemon 484.6 MB
Sending build context to Docker daemon 485.2 MB
Sending build context to Docker daemon 485.8 MB
Sending build context to Docker daemon 486.3 MB
Sending build context to Docker daemon 486.9 MB
Sending build context to Docker daemon 487.4 MB
Sending build context to Docker daemon   488 MB
Sending build context to Docker daemon 488.5 MB
Sending build context to Docker daemon 489.1 MB
Sending build context to Docker daemon 489.7 MB
Sending build context to Docker daemon 490.2 MB
Sending build context to Docker daemon 490.8 MB
Sending build context to Docker daemon 491.3 MB
Sending build context to Docker daemon 491.9 MB
Sending build context to Docker daemon 492.4 MB
Sending build context to Docker daemon   493 MB
Sending build context to Docker daemon 493.6 MB
Sending build context to Docker daemon 494.1 MB
Sending build context to Docker daemon 494.7 MB
Sending build context to Docker daemon 495.2 MB
Sending build context to Docker daemon 495.8 MB
Sending build context to Docker daemon 496.3 MB
Sending build context to Docker daemon 496.9 MB
Sending build context to Docker daemon 497.5 MB
Sending build context to Docker daemon   498 MB
Sending build context to Docker daemon 498.6 MB
Sending build context to Docker daemon 499.1 MB
Sending build context to Docker daemon 499.7 MB
Sending build context to Docker daemon 500.2 MB
Sending build context to Docker daemon 500.8 MB
Sending build context to Docker daemon 501.4 MB
Sending build context to Docker daemon 501.9 MB
Sending build context to Docker daemon 502.5 MB
Sending build context to Docker daemon   503 MB
Sending build context to Docker daemon 503.6 MB
Sending build context to Docker daemon 504.1 MB
Sending build context to Docker daemon 504.7 MB
Sending build context to Docker daemon 505.2 MB
Sending build context to Docker daemon 505.8 MB
Sending build context to Docker daemon 506.4 MB
Sending build context to Docker daemon 506.9 MB
Sending build context to Docker daemon 507.5 MB
Sending build context to Docker daemon   508 MB
Sending build context to Docker daemon 508.6 MB
Sending build context to Docker daemon 509.1 MB
Sending build context to Docker daemon 509.7 MB
Sending build context to Docker daemon 510.3 MB
Sending build context to Docker daemon 510.8 MB
Sending build context to Docker daemon 511.4 MB
Sending build context to Docker daemon 511.9 MB
Sending build context to Docker daemon 512.5 MB
Sending build context to Docker daemon   513 MB
Sending build context to Docker daemon 513.6 MB
Sending build context to Docker daemon 514.2 MB
Sending build context to Docker daemon 514.7 MB
Sending build context to Docker daemon 515.3 MB
Sending build context to Docker daemon 515.8 MB
Sending build context to Docker daemon 516.4 MB
Sending build context to Docker daemon 516.9 MB
Sending build context to Docker daemon 517.5 MB
Sending build context to Docker daemon 518.1 MB
Sending build context to Docker daemon 518.6 MB
Sending build context to Docker daemon 519.2 MB
Sending build context to Docker daemon 519.7 MB
Sending build context to Docker daemon 520.3 MB
Sending build context to Docker daemon 520.8 MB
Sending build context to Docker daemon 521.4 MB
Sending build context to Docker daemon   522 MB
Sending build context to Docker daemon 522.5 MB
Sending build context to Docker daemon 523.1 MB
Sending build context to Docker daemon 523.6 MB
Sending build context to Docker daemon 524.2 MB
Sending build context to Docker daemon 524.7 MB
Sending build context to Docker daemon 525.3 MB
Sending build context to Docker daemon 525.9 MB
Sending build context to Docker daemon 526.4 MB
Sending build context to Docker daemon   527 MB
Sending build context to Docker daemon 527.5 MB
Sending build context to Docker daemon 528.1 MB
Sending build context to Docker daemon 528.6 MB
Sending build context to Docker daemon 529.2 MB
Sending build context to Docker daemon 529.8 MB
Sending build context to Docker daemon 530.3 MB
Sending build context to Docker daemon 530.9 MB
Sending build context to Docker daemon 531.4 MB
Sending build context to Docker daemon   532 MB
Sending build context to Docker daemon 532.5 MB
Sending build context to Docker daemon 533.1 MB
Sending build context to Docker daemon 533.7 MB
Sending build context to Docker daemon 534.2 MB
Sending build context to Docker daemon 534.8 MB
Sending build context to Docker daemon 535.3 MB
Sending build context to Docker daemon 535.9 MB
Sending build context to Docker daemon 536.4 MB
Sending build context to Docker daemon   537 MB
Sending build context to Docker daemon 537.6 MB
Sending build context to Docker daemon 538.1 MB
Sending build context to Docker daemon 538.7 MB
Sending build context to Docker daemon 539.2 MB
Sending build context to Docker daemon 539.8 MB
Sending build context to Docker daemon 540.3 MB
Sending build context to Docker daemon 540.9 MB
Sending build context to Docker daemon 541.5 MB
Sending build context to Docker daemon   542 MB
Sending build context to Docker daemon 542.6 MB
Sending build context to Docker daemon 543.1 MB
Sending build context to Docker daemon 543.7 MB
Sending build context to Docker daemon 544.2 MB
Sending build context to Docker daemon 544.8 MB
Sending build context to Docker daemon 545.4 MB
Sending build context to Docker daemon 545.9 MB
Sending build context to Docker daemon 546.5 MB
Sending build context to Docker daemon   547 MB
Sending build context to Docker daemon 547.6 MB
Sending build context to Docker daemon 548.1 MB
Sending build context to Docker daemon 548.7 MB
Sending build context to Docker daemon 549.3 MB
Sending build context to Docker daemon 549.8 MB
Sending build context to Docker daemon 550.4 MB
Sending build context to Docker daemon 550.9 MB
Sending build context to Docker daemon 551.5 MB
Sending build context to Docker daemon   552 MB
Sending build context to Docker daemon 552.6 MB
Sending build context to Docker daemon 553.2 MB
Sending build context to Docker daemon 553.7 MB
Sending build context to Docker daemon 554.3 MB
Sending build context to Docker daemon 554.8 MB
Sending build context to Docker daemon 555.4 MB
Sending build context to Docker daemon 555.9 MB
Sending build context to Docker daemon 556.5 MB
Sending build context to Docker daemon 557.1 MB
Sending build context to Docker daemon 557.6 MB
Sending build context to Docker daemon 558.2 MB
Sending build context to Docker daemon 558.7 MB
Sending build context to Docker daemon 559.3 MB
Sending build context to Docker daemon 559.8 MB
Sending build context to Docker daemon 560.4 MB
Sending build context to Docker daemon   561 MB
Sending build context to Docker daemon 561.5 MB
Sending build context to Docker daemon 562.1 MB
Sending build context to Docker daemon 562.6 MB
Sending build context to Docker daemon 563.2 MB
Sending build context to Docker daemon 563.7 MB
Sending build context to Docker daemon 564.3 MB
Sending build context to Docker daemon 564.9 MB
Sending build context to Docker daemon 565.4 MB
Sending build context to Docker daemon   566 MB
Sending build context to Docker daemon 566.5 MB
Sending build context to Docker daemon 567.1 MB
Sending build context to Docker daemon 567.6 MB
Sending build context to Docker daemon 568.2 MB
Sending build context to Docker daemon 568.8 MB
Sending build context to Docker daemon 569.3 MB
Sending build context to Docker daemon 569.9 MB
Sending build context to Docker daemon 570.4 MB
Sending build context to Docker daemon   571 MB
Sending build context to Docker daemon 571.5 MB
Sending build context to Docker daemon 572.1 MB
Sending build context to Docker daemon 572.7 MB
Sending build context to Docker daemon 573.2 MB
Sending build context to Docker daemon 573.8 MB
Sending build context to Docker daemon 574.3 MB
Sending build context to Docker daemon 574.9 MB
Sending build context to Docker daemon 575.4 MB
Sending build context to Docker daemon   576 MB
Sending build context to Docker daemon 576.6 MB
Sending build context to Docker daemon 577.1 MB
Sending build context to Docker daemon 577.7 MB
Sending build context to Docker daemon 578.2 MB
Sending build context to Docker daemon 578.8 MB
Sending build context to Docker daemon 579.3 MB
Sending build context to Docker daemon 579.9 MB
Sending build context to Docker daemon 580.5 MB
Sending build context to Docker daemon   581 MB
Sending build context to Docker daemon 581.6 MB
Sending build context to Docker daemon 582.1 MB
Sending build context to Docker daemon 582.7 MB
Sending build context to Docker daemon 583.2 MB
Sending build context to Docker daemon 583.8 MB
Sending build context to Docker daemon 584.4 MB
Sending build context to Docker daemon 584.9 MB
Sending build context to Docker daemon 585.5 MB
Sending build context to Docker daemon   586 MB
Sending build context to Docker daemon 586.6 MB
Sending build context to Docker daemon 587.1 MB
Sending build context to Docker daemon 587.7 MB
Sending build context to Docker daemon 588.3 MB
Sending build context to Docker daemon 588.8 MB
Sending build context to Docker daemon 589.4 MB
Sending build context to Docker daemon 589.9 MB
Sending build context to Docker daemon 590.5 MB
Sending build context to Docker daemon   591 MB
Sending build context to Docker daemon 591.6 MB
Sending build context to Docker daemon 592.2 MB
Sending build context to Docker daemon 592.7 MB
Sending build context to Docker daemon 593.3 MB
Sending build context to Docker daemon 593.8 MB
Sending build context to Docker daemon 594.4 MB
Sending build context to Docker daemon 594.9 MB
Sending build context to Docker daemon 595.5 MB
Sending build context to Docker daemon   596 MB
Sending build context to Docker daemon 596.6 MB
Sending build context to Docker daemon 597.2 MB
Sending build context to Docker daemon 597.7 MB
Sending build context to Docker daemon 598.3 MB
Sending build context to Docker daemon 598.8 MB
Sending build context to Docker daemon 599.4 MB
Sending build context to Docker daemon 599.9 MB
Sending build context to Docker daemon 600.5 MB
Sending build context to Docker daemon 601.1 MB
Sending build context to Docker daemon 601.6 MB
Sending build context to Docker daemon 602.2 MB
Sending build context to Docker daemon 602.7 MB
Sending build context to Docker daemon 603.3 MB
Sending build context to Docker daemon 603.8 MB
Sending build context to Docker daemon 604.4 MB
Sending build context to Docker daemon   605 MB
Sending build context to Docker daemon 605.5 MB
Sending build context to Docker daemon 606.1 MB
Sending build context to Docker daemon 606.6 MB
Sending build context to Docker daemon 607.2 MB
Sending build context to Docker daemon 607.7 MB
Sending build context to Docker daemon 608.3 MB
Sending build context to Docker daemon 608.9 MB
Sending build context to Docker daemon 609.4 MB
Sending build context to Docker daemon   610 MB
Sending build context to Docker daemon 610.5 MB
Sending build context to Docker daemon 611.1 MB
Sending build context to Docker daemon 611.6 MB
Sending build context to Docker daemon 612.2 MB
Sending build context to Docker daemon 612.8 MB
Sending build context to Docker daemon 613.3 MB
Sending build context to Docker daemon 613.9 MB
Sending build context to Docker daemon 614.4 MB
Sending build context to Docker daemon   615 MB
Sending build context to Docker daemon 615.5 MB
Sending build context to Docker daemon 616.1 MB
Sending build context to Docker daemon 616.7 MB
Sending build context to Docker daemon 617.2 MB
Sending build context to Docker daemon 617.8 MB
Sending build context to Docker daemon 618.3 MB
Sending build context to Docker daemon 618.9 MB
Sending build context to Docker daemon 619.4 MB
Sending build context to Docker daemon   620 MB
Sending build context to Docker daemon 620.6 MB
Sending build context to Docker daemon 621.1 MB
Sending build context to Docker daemon 621.7 MB
Sending build context to Docker daemon 622.2 MB
Sending build context to Docker daemon 622.8 MB
Sending build context to Docker daemon 623.3 MB
Sending build context to Docker daemon 623.9 MB
Sending build context to Docker daemon 624.5 MB
Sending build context to Docker daemon   625 MB
Sending build context to Docker daemon 625.6 MB
Sending build context to Docker daemon 626.1 MB
Sending build context to Docker daemon 626.7 MB
Sending build context to Docker daemon 627.2 MB
Sending build context to Docker daemon 627.8 MB
Sending build context to Docker daemon 628.4 MB
Sending build context to Docker daemon 628.9 MB
Sending build context to Docker daemon 629.5 MB
Sending build context to Docker daemon   630 MB
Sending build context to Docker daemon 630.6 MB
Sending build context to Docker daemon 631.1 MB
Sending build context to Docker daemon 631.7 MB
Sending build context to Docker daemon 632.3 MB
Sending build context to Docker daemon 632.8 MB
Sending build context to Docker daemon 633.4 MB
Sending build context to Docker daemon 633.9 MB
Sending build context to Docker daemon 634.5 MB
Sending build context to Docker daemon   635 MB
Sending build context to Docker daemon 635.6 MB
Sending build context to Docker daemon 636.2 MB
Sending build context to Docker daemon 636.7 MB
Sending build context to Docker daemon 637.3 MB
Sending build context to Docker daemon 637.8 MB
Sending build context to Docker daemon 638.4 MB
Sending build context to Docker daemon 638.9 MB
Sending build context to Docker daemon 639.5 MB
Sending build context to Docker daemon 640.1 MB
Sending build context to Docker daemon 640.6 MB
Sending build context to Docker daemon 641.2 MB
Sending build context to Docker daemon 641.7 MB
Sending build context to Docker daemon 642.3 MB
Sending build context to Docker daemon 642.8 MB
Sending build context to Docker daemon 643.2 MB

Step 1 : FROM ubuntu:16.04
16.04: Pulling from library/ubuntu
Digest: sha256:34471448724419596ca4e890496d375801de21b0e67b81a77fd6155ce001edad
Status: Image is up to date for ubuntu:16.04
 ---> ccc7a11d65b1
Step 2 : LABEL software.version 201604
 ---> Running in 7bd5d356bd6f
 ---> bb54a9bf61b1
Removing intermediate container 7bd5d356bd6f
Step 3 : LABEL version 201604
 ---> Running in 10a7c3332fc2
 ---> 9d5e0eb5d345
Removing intermediate container 10a7c3332fc2
Step 4 : LABEL software Passatutto
 ---> Running in e386df24897a
 ---> abb4f1e6d087
Removing intermediate container e386df24897a
Step 5 : MAINTAINER PhenoMeNal-H2020 Project ( phenomenal-h2020-users@googlegroups.com )
 ---> Running in 34e67c2f31c3
 ---> e11bbeee4f93
Removing intermediate container 34e67c2f31c3
Step 6 : LABEL Description "Metabolite pep score generator"
 ---> Running in adda45f4b4a6
 ---> 57c886408f98
Removing intermediate container adda45f4b4a6
Step 7 : RUN apt-get -y update
 ---> Running in f8490dc18878
Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB]
Get:5 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [48.9 kB]
Get:6 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [443 kB]
Get:7 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.8 kB]
Get:8 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [207 kB]
Get:9 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [2935 B]
Get:10 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [217 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [804 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.6 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [671 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [17.5 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [5177 B]
Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [6236 B]
Fetched 24.4 MB in 1s (13.9 MB/s)
Reading package lists...
 ---> 6d0d9bce653a
Removing intermediate container f8490dc18878
Step 8 : RUN apt-get -y --no-install-recommends --fix-missing install make gcc gfortran
 ---> Running in 9bc04b172ebf
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  binutils cpp cpp-5 gcc-5 gfortran-5 libasan2 libatomic1 libc-dev-bin
  libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgfortran-5-dev libgfortran3
  libgmp10 libgomp1 libisl15 libitm1 liblsan0 libmpc3 libmpfr4 libmpx0
  libquadmath0 libtsan0 libubsan0 linux-libc-dev
Suggested packages:
  binutils-doc cpp-doc gcc-5-locales gcc-multilib manpages-dev autoconf
  automake libtool flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg
  libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
  libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
  gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc
  libgfortran3-dbg glibc-doc make-doc
Recommended packages:
  manpages manpages-dev
The following NEW packages will be installed:
  binutils cpp cpp-5 gcc gcc-5 gfortran gfortran-5 libasan2 libatomic1
  libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libgcc-5-dev libgfortran-5-dev
  libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblsan0 libmpc3 libmpfr4
  libmpx0 libquadmath0 libtsan0 libubsan0 linux-libc-dev make
0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 34.5 MB of archives.
After this operation, 125 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.4 [2311 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.4 [7653 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.4 [38.8 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.4 [55.0 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.4 [27.4 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.4 [8912 B]
Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.4 [264 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.4 [105 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.4 [244 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.4 [95.3 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.4 [40.1 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.4 [9766 B]
Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.4 [131 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.4 [2237 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.4 [8577 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.4 [260 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.4 [291 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu9 [68.6 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-93.116 [836 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu9 [2082 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.4 [8027 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B]
Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 34.5 MB in 0s (79.4 MB/s)
Selecting previously unselected package libgmp10:amd64.
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(Reading database ... 4768 files and directories currently installed.)
Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ...
Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ...
Selecting previously unselected package libmpfr4:amd64.
Preparing to unpack .../libmpfr4_3.1.4-1_amd64.deb ...
Unpacking libmpfr4:amd64 (3.1.4-1) ...
Selecting previously unselected package libmpc3:amd64.
Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ...
Unpacking libmpc3:amd64 (1.0.3-1) ...
Selecting previously unselected package binutils.
Preparing to unpack .../binutils_2.26.1-1ubuntu1~16.04.4_amd64.deb ...
Unpacking binutils (2.26.1-1ubuntu1~16.04.4) ...
Selecting previously unselected package libisl15:amd64.
Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ...
Unpacking libisl15:amd64 (0.16.1-1) ...
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Unpacking cpp-5 (5.4.0-6ubuntu1~16.04.4) ...
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Preparing to unpack .../cpp_4%3a5.3.1-1ubuntu1_amd64.deb ...
Unpacking cpp (4:5.3.1-1ubuntu1) ...
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Unpacking libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
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Unpacking libgomp1:amd64 (5.4.0-6ubuntu1~16.04.4) ...
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Unpacking libitm1:amd64 (5.4.0-6ubuntu1~16.04.4) ...
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Unpacking libatomic1:amd64 (5.4.0-6ubuntu1~16.04.4) ...
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Unpacking libasan2:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Selecting previously unselected package liblsan0:amd64.
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Unpacking liblsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Selecting previously unselected package libtsan0:amd64.
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Unpacking libtsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Selecting previously unselected package libubsan0:amd64.
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Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
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Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.4) ...
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Unpacking gcc (4:5.3.1-1ubuntu1) ...
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Unpacking gfortran (4:5.3.1-1ubuntu1) ...
Selecting previously unselected package make.
Preparing to unpack .../archives/make_4.1-6_amd64.deb ...
Unpacking make (4.1-6) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ...
Setting up libmpfr4:amd64 (3.1.4-1) ...
Setting up libmpc3:amd64 (1.0.3-1) ...
Setting up binutils (2.26.1-1ubuntu1~16.04.4) ...
Setting up libisl15:amd64 (0.16.1-1) ...
Setting up cpp-5 (5.4.0-6ubuntu1~16.04.4) ...
Setting up cpp (4:5.3.1-1ubuntu1) ...
Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up gcc-5 (5.4.0-6ubuntu1~16.04.4) ...
Setting up gcc (4:5.3.1-1ubuntu1) ...
Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up libc-dev-bin (2.23-0ubuntu9) ...
Setting up linux-libc-dev:amd64 (4.4.0-93.116) ...
Setting up libc6-dev:amd64 (2.23-0ubuntu9) ...
Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.4) ...
Setting up gfortran (4:5.3.1-1ubuntu1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up make (4.1-6) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
 ---> 73efc6af8adf
Removing intermediate container 9bc04b172ebf
Step 9 : RUN apt-get -y --no-install-recommends --fix-missing install g++ libnetcdf-dev
 ---> Running in 961019e1c225
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  g++-5 hdf5-helpers libaec-dev libaec0 libasn1-8-heimdal libcurl3-gnutls
  libcurl4-gnutls-dev libffi6 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal
  libhcrypto4-heimdal libhdf5-10 libhdf5-cpp-11 libhdf5-dev
  libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal
  libidn11 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
  libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0
  libldap-2.4-2 libnetcdf11 libnettle6 libp11-kit0 libroken18-heimdal librtmp1
  libsasl2-2 libsasl2-modules-db libsqlite3-0 libstdc++-5-dev libsz2
  libtasn1-6 libwind0-heimdal zlib1g-dev
Suggested packages:
  g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg libcurl4-doc
  libcurl3-dbg libgnutls-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
  pkg-config gnutls-bin krb5-doc krb5-user libhdf5-doc netcdf-bin netcdf-doc
  libstdc++-5-doc
Recommended packages:
  ca-certificates krb5-locales pkg-config libsasl2-modules
The following NEW packages will be installed:
  g++ g++-5 hdf5-helpers libaec-dev libaec0 libasn1-8-heimdal libcurl3-gnutls
  libcurl4-gnutls-dev libffi6 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal
  libhcrypto4-heimdal libhdf5-10 libhdf5-cpp-11 libhdf5-dev
  libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal
  libidn11 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
  libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0
  libldap-2.4-2 libnetcdf-dev libnetcdf11 libnettle6 libp11-kit0
  libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0
  libstdc++-5-dev libsz2 libtasn1-6 libwind0-heimdal zlib1g-dev
0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.2 MB of archives.
After this operation, 89.2 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3 [111 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.1 [45.6 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.2 [43.3 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.3 [548 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1 [396 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B]
Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2 [273 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2 [120 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14build1 [14.5 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14build1 [48.7 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.2 [160 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.2 [184 kB]
Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.4 [1426 kB]
Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.4 [8300 kB]
Get:31 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B]
Get:32 http://archive.ubuntu.com/ubuntu xenial/universe amd64 hdf5-helpers amd64 1.8.16+docs-4ubuntu1 [12.5 kB]
Get:33 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libaec0 amd64 0.3.2-1 [18.0 kB]
Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl4-gnutls-dev amd64 7.47.0-1ubuntu2.2 [260 kB]
Get:35 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsz2 amd64 0.3.2-1 [5048 B]
Get:36 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf5-10 amd64 1.8.16+docs-4ubuntu1 [995 kB]
Get:37 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf5-cpp-11 amd64 1.8.16+docs-4ubuntu1 [101 kB]
Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB]
Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3 [254 kB]
Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B]
Get:41 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B]
Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B]
Get:43 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libaec-dev amd64 0.3.2-1 [16.6 kB]
Get:44 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libhdf5-dev amd64 1.8.16+docs-4ubuntu1 [5005 kB]
Get:45 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnetcdf11 amd64 1:4.4.0-2 [286 kB]
Get:46 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnetcdf-dev amd64 1:4.4.0-2 [36.9 kB]
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Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14build1) ...
Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14build1) ...
Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.2) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ...
Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.2) ...
Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.4) ...
Setting up g++-5 (5.4.0-6ubuntu1~16.04.4) ...
Setting up g++ (4:5.3.1-1ubuntu1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up hdf5-helpers (1.8.16+docs-4ubuntu1) ...
Setting up libaec0:amd64 (0.3.2-1) ...
Setting up libcurl4-gnutls-dev:amd64 (7.47.0-1ubuntu2.2) ...
Setting up libsz2:amd64 (0.3.2-1) ...
Setting up libhdf5-10:amd64 (1.8.16+docs-4ubuntu1) ...
Setting up libhdf5-cpp-11:amd64 (1.8.16+docs-4ubuntu1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ...
Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3) ...
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update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnetcdf11 (1:4.4.0-2) ...
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Removing intermediate container 961019e1c225
Step 10 : RUN apt-get -y --no-install-recommends --fix-missing install libxml2-dev libblas-dev
 ---> Running in f2e4ffc949c9
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  icu-devtools libblas-common libblas3 libicu-dev libicu55 libxml2
Suggested packages:
  liblapack-doc-man liblapack-doc icu-doc pkg-config
Recommended packages:
  xml-core
The following NEW packages will be installed:
  icu-devtools libblas-common libblas-dev libblas3 libicu-dev libicu55 libxml2
  libxml2-dev
0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded.
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Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.2 [697 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.2 [166 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B]
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Selecting previously unselected package libicu-dev:amd64.
Preparing to unpack .../libicu-dev_55.1-7ubuntu0.2_amd64.deb ...
Unpacking libicu-dev:amd64 (55.1-7ubuntu0.2) ...
Selecting previously unselected package libxml2-dev:amd64.
Preparing to unpack .../libxml2-dev_2.9.3+dfsg1-1ubuntu0.2_amd64.deb ...
Unpacking libxml2-dev:amd64 (2.9.3+dfsg1-1ubuntu0.2) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
Setting up libicu55:amd64 (55.1-7ubuntu0.2) ...
Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.2) ...
Setting up icu-devtools (55.1-7ubuntu0.2) ...
Setting up libblas-common (3.6.0-2ubuntu2) ...
Setting up libblas3 (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libicu-dev:amd64 (55.1-7ubuntu0.2) ...
Setting up libxml2-dev:amd64 (2.9.3+dfsg1-1ubuntu0.2) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
 ---> 776d941b4239
Removing intermediate container f2e4ffc949c9
Step 11 : RUN apt-get -y --no-install-recommends --fix-missing install liblapack-dev
 ---> Running in 7ad814dcdd33
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  liblapack3
Suggested packages:
  liblapack-doc-man liblapack-doc
The following NEW packages will be installed:
  liblapack-dev liblapack3
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 3886 kB of archives.
After this operation, 17.3 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 3886 kB in 0s (50.0 MB/s)
Selecting previously unselected package liblapack3.
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(Reading database ... 8604 files and directories currently installed.)
Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ...
Unpacking liblapack3 (3.6.0-2ubuntu2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.6.0-2ubuntu2_amd64.deb ...
Unpacking liblapack-dev (3.6.0-2ubuntu2) ...
Setting up liblapack3 (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
 ---> 882a3de0a8c3
Removing intermediate container 7ad814dcdd33
Step 12 : RUN apt-get -y --no-install-recommends --fix-missing install r-base
 ---> Running in 754d7aa1a89c
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  ca-certificates fontconfig fontconfig-config fonts-dejavu-core libcairo2
  libcurl3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libice6 libjbig0 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
  libpng12-0 libsm6 libssl1.0.0 libtcl8.6 libthai-data libthai0 libtiff5
  libtk8.6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 openssl r-base-core
  r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign
  r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv
  r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival
  r-recommended tzdata ucf unzip x11-common xdg-utils zip
Suggested packages:
  tcl8.6 tk8.6 ess r-doc-info | r-doc-pdf r-mathlib r-base-html gvfs-bin
Recommended packages:
  libglib2.0-data shared-mime-info xdg-user-dirs r-base-html r-doc-html
  r-base-dev libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  ca-certificates fontconfig fontconfig-config fonts-dejavu-core libcairo2
  libcurl3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libice6 libjbig0 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
  libpng12-0 libsm6 libssl1.0.0 libtcl8.6 libthai-data libthai0 libtiff5
  libtk8.6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 openssl r-base
  r-base-core r-cran-boot r-cran-class r-cran-cluster r-cran-codetools
  r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix
  r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial
  r-cran-survival r-recommended tzdata ucf unzip x11-common xdg-utils zip
0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded.
Need to get 45.8 MB of archives.
After this operation, 91.7 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.3 [71.2 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1 [116 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B]
Get:21 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2016j-0ubuntu0.16.04 [168 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.8 [1081 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.8 [492 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 ca-certificates all 20160104ubuntu1 [191 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu1 [1119 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB]
Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B]
Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB]
Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.2 [186 kB]
Get:32 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB]
Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB]
Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB]
Get:35 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB]
Get:36 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB]
Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB]
Get:38 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB]
Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB]
Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB]
Get:41 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B]
Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB]
Get:43 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.2 [146 kB]
Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB]
Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB]
Get:46 http://archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB]
Get:47 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB]
Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-utils all 1.1.1-1ubuntu1.16.04.1 [59.7 kB]
Get:49 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-base-core amd64 3.2.3-4 [20.4 MB]
Get:50 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-boot all 1.3-17-1 [571 kB]
Get:51 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-cluster amd64 2.0.3-1 [465 kB]
Get:52 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-foreign amd64 0.8.66-1 [196 kB]
Get:53 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-mass amd64 7.3-45-1 [1018 kB]
Get:54 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-kernsmooth amd64 2.23-15-1 [80.9 kB]
Get:55 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-lattice amd64 0.20-33-1 [703 kB]
Get:56 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-nlme amd64 3.1.124-1 [1986 kB]
Get:57 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-matrix amd64 1.2-3-1 [2973 kB]
Get:58 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-mgcv amd64 1.8-11-1 [1930 kB]
Get:59 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-survival amd64 2.38-3-1 [4433 kB]
Get:60 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-rpart amd64 4.1-10-1 [856 kB]
Get:61 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-class amd64 7.3-14-1 [81.1 kB]
Get:62 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-nnet amd64 7.3-12-1 [96.8 kB]
Get:63 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-spatial amd64 7.3-11-1 [118 kB]
Get:64 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-cran-codetools all 0.2-14-1 [46.0 kB]
Get:65 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-recommended all 3.2.3-4 [2766 B]
Get:66 http://archive.ubuntu.com/ubuntu xenial/universe amd64 r-base all 3.2.3-4 [9196 B]
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Selecting previously unselected package libpangoft2-1.0-0:amd64.
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Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ...
Selecting previously unselected package libpaper1:amd64.
Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ...
Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ...
Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Selecting previously unselected package libtiff5:amd64.
Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.2_amd64.deb ...
Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.2) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.5-1) ...
Selecting previously unselected package libxt6:amd64.
Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ...
Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ...
Selecting previously unselected package zip.
Preparing to unpack .../archives/zip_3.0-11_amd64.deb ...
Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ...
Unpacking unzip (6.0-20ubuntu1) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.1_all.deb ...
Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../r-base-core_3.2.3-4_amd64.deb ...
Unpacking r-base-core (3.2.3-4) ...
Selecting previously unselected package r-cran-boot.
Preparing to unpack .../r-cran-boot_1.3-17-1_all.deb ...
Unpacking r-cran-boot (1.3-17-1) ...
Selecting previously unselected package r-cran-cluster.
Preparing to unpack .../r-cran-cluster_2.0.3-1_amd64.deb ...
Unpacking r-cran-cluster (2.0.3-1) ...
Selecting previously unselected package r-cran-foreign.
Preparing to unpack .../r-cran-foreign_0.8.66-1_amd64.deb ...
Unpacking r-cran-foreign (0.8.66-1) ...
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Preparing to unpack .../r-cran-mass_7.3-45-1_amd64.deb ...
Unpacking r-cran-mass (7.3-45-1) ...
Selecting previously unselected package r-cran-kernsmooth.
Preparing to unpack .../r-cran-kernsmooth_2.23-15-1_amd64.deb ...
Unpacking r-cran-kernsmooth (2.23-15-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../r-cran-lattice_0.20-33-1_amd64.deb ...
Unpacking r-cran-lattice (0.20-33-1) ...
Selecting previously unselected package r-cran-nlme.
Preparing to unpack .../r-cran-nlme_3.1.124-1_amd64.deb ...
Unpacking r-cran-nlme (3.1.124-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../r-cran-matrix_1.2-3-1_amd64.deb ...
Unpacking r-cran-matrix (1.2-3-1) ...
Selecting previously unselected package r-cran-mgcv.
Preparing to unpack .../r-cran-mgcv_1.8-11-1_amd64.deb ...
Unpacking r-cran-mgcv (1.8-11-1) ...
Selecting previously unselected package r-cran-survival.
Preparing to unpack .../r-cran-survival_2.38-3-1_amd64.deb ...
Unpacking r-cran-survival (2.38-3-1) ...
Selecting previously unselected package r-cran-rpart.
Preparing to unpack .../r-cran-rpart_4.1-10-1_amd64.deb ...
Unpacking r-cran-rpart (4.1-10-1) ...
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Preparing to unpack .../r-cran-class_7.3-14-1_amd64.deb ...
Unpacking r-cran-class (7.3-14-1) ...
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Preparing to unpack .../r-cran-nnet_7.3-12-1_amd64.deb ...
Unpacking r-cran-nnet (7.3-12-1) ...
Selecting previously unselected package r-cran-spatial.
Preparing to unpack .../r-cran-spatial_7.3-11-1_amd64.deb ...
Unpacking r-cran-spatial (7.3-11-1) ...
Selecting previously unselected package r-cran-codetools.
Preparing to unpack .../r-cran-codetools_0.2-14-1_all.deb ...
Unpacking r-cran-codetools (0.2-14-1) ...
Selecting previously unselected package r-recommended.
Preparing to unpack .../r-recommended_3.2.3-4_all.deb ...
Unpacking r-recommended (3.2.3-4) ...
Selecting previously unselected package r-base.
Preparing to unpack .../r-base_3.2.3-4_all.deb ...
Unpacking r-base (3.2.3-4) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
Processing triggers for systemd (229-4ubuntu19) ...
Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ...
Setting up libx11-data (2:1.6.3-1ubuntu2) ...
Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ...
Setting up libxext6:amd64 (2:1.3.3-1) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up ucf (3.0036) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up fontconfig-config (2.11.94-0ubuntu1.1) ...
Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.3) ...
Setting up libpng12-0:amd64 (1.2.54-1ubuntu1) ...
Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ...
Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ...
Setting up fontconfig (2.11.94-0ubuntu1.1) ...
Regenerating fonts cache... done.
Setting up x11-common (1:7.7+13ubuntu3) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:amd64 (2:1.0.9-1) ...
Setting up libsm6:amd64 (2:1.2.2-1) ...
Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ...
Setting up libxft2:amd64 (2.3.2-1) ...
Setting up libxss1:amd64 (1:1.2.2-1) ...
Setting up libjbig0:amd64 (2.1-3.1) ...
Setting up tzdata (2016j-0ubuntu0.16.04) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype

Current default time zone: 'Etc/UTC'
Local time is now:      Fri Sep  8 08:10:42 UTC 2017.
Universal Time is now:  Fri Sep  8 08:10:42 UTC 2017.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.8) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up openssl (1.0.2g-1ubuntu4.8) ...
Setting up ca-certificates (20160104ubuntu1) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu1) ...
No schema files found: doing nothing.
Setting up libpixman-1-0:amd64 (0.33.6-1) ...
Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ...
Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ...
Setting up libcairo2:amd64 (1.14.6-1) ...
Setting up libcurl3:amd64 (7.47.0-1ubuntu2.2) ...
Setting up libdatrie1:amd64 (0.2.10-2) ...
Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ...
Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ...
Setting up libthai-data (0.1.24-2) ...
Setting up libthai0:amd64 (0.1.24-2) ...
Setting up libpango-1.0-0:amd64 (1.38.1-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ...
Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype

Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ...
Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Setting up libtiff5:amd64 (4.0.6-1ubuntu0.2) ...
Setting up libtk8.6:amd64 (8.6.5-1) ...
Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ...
Setting up zip (3.0-11) ...
Setting up unzip (6.0-20ubuntu1) ...
Setting up xdg-utils (1.1.1-1ubuntu1.16.04.1) ...
Setting up r-base-core (3.2.3-4) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype

Creating config file /etc/R/Renviron with new version
Setting up r-cran-boot (1.3-17-1) ...
Setting up r-cran-cluster (2.0.3-1) ...
Setting up r-cran-foreign (0.8.66-1) ...
Setting up r-cran-mass (7.3-45-1) ...
Setting up r-cran-kernsmooth (2.23-15-1) ...
Setting up r-cran-lattice (0.20-33-1) ...
Setting up r-cran-nlme (3.1.124-1) ...
Setting up r-cran-matrix (1.2-3-1) ...
Setting up r-cran-mgcv (1.8-11-1) ...
Setting up r-cran-survival (2.38-3-1) ...
Setting up r-cran-rpart (4.1-10-1) ...
Setting up r-cran-class (7.3-14-1) ...
Setting up r-cran-nnet (7.3-12-1) ...
Setting up r-cran-spatial (7.3-11-1) ...
Setting up r-cran-codetools (0.2-14-1) ...
Setting up r-recommended (3.2.3-4) ...
Setting up r-base (3.2.3-4) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
Processing triggers for systemd (229-4ubuntu19) ...
Processing triggers for ca-certificates (20160104ubuntu1) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
 ---> f166119ada7a
Removing intermediate container 754d7aa1a89c
Step 13 : RUN R -e 'install.packages(c("R.utils","tools"),repos = "http://cran.us.r-project.org")'
 ---> Running in 1e6b49da49b8

R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> install.packages(c("R.utils","tools"),repos = "http://cran.us.r-project.org")
Installing packages into '/usr/local/lib/R/site-library'
(as 'lib' is unspecified)
also installing the dependencies 'R.oo', 'R.methodsS3'

trying URL 'http://cran.us.r-project.org/src/contrib/R.oo_1.21.0.tar.gz'
Content type 'application/x-gzip' length 403410 bytes (393 KB)
==================================================
downloaded 393 KB

trying URL 'http://cran.us.r-project.org/src/contrib/R.methodsS3_1.7.1.tar.gz'
Content type 'application/x-gzip' length 25731 bytes (25 KB)
==================================================
downloaded 25 KB

trying URL 'http://cran.us.r-project.org/src/contrib/R.utils_2.5.0.tar.gz'
Content type 'application/x-gzip' length 389402 bytes (380 KB)
==================================================
downloaded 380 KB

* installing *source* package 'R.methodsS3' ...
** package 'R.methodsS3' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (R.methodsS3)
* installing *source* package 'R.oo' ...
** package 'R.oo' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (R.oo)
* installing *source* package 'R.utils' ...
** package 'R.utils' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function warnings to warnings.default, which was defined in environment base.
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (R.utils)
Warning message:

The downloaded source packages are in
	'/tmp/Rtmpq0spNf/downloaded_packages'
package 'tools' is not available (for R version 3.2.3) 
> 
> 
 ---> 6eea416f63f0
Removing intermediate container 1e6b49da49b8
Step 14 : RUN apt-get -y update
 ---> Running in 7b6607cb517b
Hit:1 http://archive.ubuntu.com/ubuntu xenial InRelease
Hit:2 http://archive.ubuntu.com/ubuntu xenial-updates InRelease
Hit:3 http://archive.ubuntu.com/ubuntu xenial-backports InRelease
Hit:4 http://security.ubuntu.com/ubuntu xenial-security InRelease
Reading package lists...
 ---> 874f73b990c6
Removing intermediate container 7b6607cb517b
Step 15 : RUN apt-get -y install wget default-jre-headless unzip
 ---> Running in a17d6baaf3be
Reading package lists...
Building dependency tree...
Reading state information...
unzip is already the newest version (6.0-20ubuntu1).
unzip set to manually installed.
The following additional packages will be installed:
  ca-certificates-java dbus java-common libavahi-client3 libavahi-common-data
  libavahi-common3 libcap-ng0 libcups2 libdbus-1-3 liblcms2-2 libnspr4 libnss3
  libnss3-nssdb libpcsclite1 libxi6 libxtst6 openjdk-8-jre-headless
Suggested packages:
  dbus-user-session | dbus-x11 default-jre cups-common liblcms2-utils pcscd
  openjdk-8-jre-jamvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic
  fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic
The following NEW packages will be installed:
  ca-certificates-java dbus default-jre-headless java-common libavahi-client3
  libavahi-common-data libavahi-common3 libcap-ng0 libcups2 libdbus-1-3
  liblcms2-2 libnspr4 libnss3 libnss3-nssdb libpcsclite1 libxi6 libxtst6
  openjdk-8-jre-headless wget
0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
Need to get 29.3 MB of archives.
After this operation, 107 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblcms2-2 amd64 2.6-3ubuntu2 [137 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtst6 amd64 2:1.2.2-1 [14.1 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 java-common all 0.56ubuntu2 [7742 B]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 default-jre-headless amd64 2:1.8-56ubuntu2 [4380 B]
Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnspr4 amd64 2:4.13.1-0ubuntu0.16.04.1 [112 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnss3-nssdb all 2:3.28.4-0ubuntu0.16.04.2 [10.6 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnss3 amd64 2:3.28.4-0ubuntu0.16.04.2 [1147 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 ca-certificates-java all 20160321 [12.9 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libavahi-common-data amd64 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libavahi-common3 amd64 0.6.32~rc+dfsg-1ubuntu2 [21.6 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu3.3 [161 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libavahi-client3 amd64 0.6.32~rc+dfsg-1ubuntu2 [25.1 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcups2 amd64 2.1.3-4ubuntu0.3 [197 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpcsclite1 amd64 1.8.14-1ubuntu1.16.04.1 [21.4 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jre-headless amd64 8u131-b11-2ubuntu1.16.04.3 [27.0 MB]
Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcap-ng0 amd64 0.7.7-1 [10.9 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dbus amd64 1.10.6-1ubuntu3.3 [142 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.2 [298 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 29.3 MB in 0s (79.7 MB/s)
Selecting previously unselected package liblcms2-2:amd64.
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(Reading database ... 13890 files and directories currently installed.)
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Unpacking liblcms2-2:amd64 (2.6-3ubuntu2) ...
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Unpacking libxtst6:amd64 (2:1.2.2-1) ...
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Unpacking default-jre-headless (2:1.8-56ubuntu2) ...
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Unpacking libnspr4:amd64 (2:4.13.1-0ubuntu0.16.04.1) ...
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Unpacking libnss3-nssdb (2:3.28.4-0ubuntu0.16.04.2) ...
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Unpacking libnss3:amd64 (2:3.28.4-0ubuntu0.16.04.2) ...
Selecting previously unselected package ca-certificates-java.
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Unpacking ca-certificates-java (20160321) ...
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Processing triggers for ca-certificates (20160104ubuntu1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.23-0ubuntu9) ...
Processing triggers for systemd (229-4ubuntu19) ...
Setting up liblcms2-2:amd64 (2.6-3ubuntu2) ...
Setting up libxtst6:amd64 (2:1.2.2-1) ...
Setting up java-common (0.56ubuntu2) ...
Setting up libnspr4:amd64 (2:4.13.1-0ubuntu0.16.04.1) ...
Setting up libavahi-common-data:amd64 (0.6.32~rc+dfsg-1ubuntu2) ...
Setting up libavahi-common3:amd64 (0.6.32~rc+dfsg-1ubuntu2) ...
Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu3.3) ...
Setting up libavahi-client3:amd64 (0.6.32~rc+dfsg-1ubuntu2) ...
Setting up libcups2:amd64 (2.1.3-4ubuntu0.3) ...
Setting up libpcsclite1:amd64 (1.8.14-1ubuntu1.16.04.1) ...
Setting up libxi6:amd64 (2:1.7.6-1) ...
Setting up libcap-ng0:amd64 (0.7.7-1) ...
Setting up dbus (1.10.6-1ubuntu3.3) ...
Setting up wget (1.17.1-1ubuntu1.2) ...
Setting up libnss3-nssdb (2:3.28.4-0ubuntu0.16.04.2) ...
Setting up libnss3:amd64 (2:3.28.4-0ubuntu0.16.04.2) ...
Setting up openjdk-8-jre-headless:amd64 (8u131-b11-2ubuntu1.16.04.3) ...
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up ca-certificates-java (20160321) ...
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:Certigna.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:SecureTrust_CA.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Juur-SK.pem
Adding debian:WoSign.pem
Adding debian:Certum_Root_CA.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:CA_Disig.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:CA_WoSign_ECC_Root.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Certification_Authority_of_WoSign_G2.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:Certinomis_-_Root_CA.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:WoSign_China.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:EC-ACC.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:PSCProcert.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:IGC_A.pem
Adding debian:S-TRUST_Universal_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Izenpe.com.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:ComSign_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:certSIGN_ROOT_CA.pem
done.
Setting up default-jre-headless (2:1.8-56ubuntu2) ...
Processing triggers for libc-bin (2.23-0ubuntu9) ...
Processing triggers for systemd (229-4ubuntu19) ...
Processing triggers for ca-certificates (20160104ubuntu1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.
 ---> d941a72ba294
Removing intermediate container a17d6baaf3be
Step 16 : RUN apt-get -y clean && apt-get -y autoremove && rm -rf /var/lib/{cache,log}/ /tmp/* /var/tmp/*
 ---> Running in ca11896b4bff
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 ---> 971d7105c4ed
Removing intermediate container ca11896b4bff
Step 17 : ADD passatutto/Passatutto /usr/local/bin/Passatutto
 ---> 0ac202084cfa
Removing intermediate container 4dbf5ff31b13
Step 18 : ADD scripts/*.r /usr/local/bin/
 ---> ca06babe4f58
Removing intermediate container a33119b7f76a
Step 19 : RUN chmod +x /usr/local/bin/*.r
 ---> Running in ec5f05180b1a
 ---> 37d10d06c2d5
Removing intermediate container ec5f05180b1a
Step 20 : ADD runTest1.sh /usr/local/bin/runTest1.sh
 ---> d3b63d8ad05d
Removing intermediate container 83eab02ded25
Step 21 : RUN chmod +x /usr/local/bin/runTest1.sh
 ---> Running in 35f1ffcdce49
 ---> 0b9238a2391f
Removing intermediate container 35f1ffcdce49
Successfully built 0b9238a2391f
[container-passatutto] $ docker tag 0b9238a2391f docker-registry-v2.local:30750/phnmnl/passatutto:latest
[container-passatutto] $ docker inspect 0b9238a2391f
[container-passatutto] $ /bin/bash -xe /tmp/hudson8544417446736341924.sh
+ wget -O test-built-container https://raw.githubusercontent.com/phnmnl/jenkins-scripts/master/test-built-container
--2017-09-08 08:11:55--  https://raw.githubusercontent.com/phnmnl/jenkins-scripts/master/test-built-container
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|151.101.0.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 2760 (2.7K) [text/plain]
Saving to: ‘test-built-container’

     0K ..                                                    100% 68.9M=0s

2017-09-08 08:11:55 (68.9 MB/s) - ‘test-built-container’ saved [2760/2760]

+ bash test-built-container docker-registry-v2.local:30750/phnmnl/passatutto
Unrecognized option: -verison
Error: Could not create the Java Virtual Machine.
Error: A fatal exception has occurred. Program will exit.
Build step 'Execute shell' marked build as failure
Finished: FAILURE